diff --git a/web/app/components/app/configuration/dataset-config/index.tsx b/web/app/components/app/configuration/dataset-config/index.tsx
index 8a919f1d12..b1de2cabd9 100644
--- a/web/app/components/app/configuration/dataset-config/index.tsx
+++ b/web/app/components/app/configuration/dataset-config/index.tsx
@@ -2,6 +2,7 @@
 import type { FC } from 'react'
 import React, { useCallback, useMemo } from 'react'
 import { useTranslation } from 'react-i18next'
+import { intersectionBy } from 'lodash-es'
 import { useContext } from 'use-context-selector'
 import produce from 'immer'
 import { v4 as uuid4 } from 'uuid'
@@ -131,11 +132,11 @@ const DatasetConfig: FC = () => {
   }, [dataSet, userProfile?.id])
 
   const metadataList = useMemo(() => {
-    return formattedDataset.filter((dataset) => {
+    return intersectionBy(...formattedDataset.filter((dataset) => {
       return !!dataset.doc_metadata
     }).map((dataset) => {
       return dataset.doc_metadata!
-    }).flat()
+    }), 'name')
   }, [formattedDataset])
 
   const handleMetadataFilterModeChange = useCallback((newMode: MetadataFilteringModeEnum) => {
diff --git a/web/app/components/datasets/metadata/edit-metadata-batch/modal.tsx b/web/app/components/datasets/metadata/edit-metadata-batch/modal.tsx
index 25bf24a045..c88bb97249 100644
--- a/web/app/components/datasets/metadata/edit-metadata-batch/modal.tsx
+++ b/web/app/components/datasets/metadata/edit-metadata-batch/modal.tsx
@@ -38,7 +38,6 @@ const EditMetadataBatchModal: FC<Props> = ({
   onHide,
   onShowManage,
 }) => {
-  console.log(list)
   const { t } = useTranslation()
   const [templeList, setTempleList] = useState<MetadataItemWithEdit[]>(list)
   const handleTemplesChange = useCallback((payload: MetadataItemWithEdit) => {
diff --git a/web/app/components/workflow/nodes/knowledge-retrieval/components/metadata/metadata-trigger.tsx b/web/app/components/workflow/nodes/knowledge-retrieval/components/metadata/metadata-trigger.tsx
index 8cdc506923..4ad14aed89 100644
--- a/web/app/components/workflow/nodes/knowledge-retrieval/components/metadata/metadata-trigger.tsx
+++ b/web/app/components/workflow/nodes/knowledge-retrieval/components/metadata/metadata-trigger.tsx
@@ -2,7 +2,6 @@ import {
   useEffect,
   useState,
 } from 'react'
-import { unionBy } from 'lodash-es'
 import { useTranslation } from 'react-i18next'
 import { RiFilter3Line } from '@remixicon/react'
 import MetadataPanel from './metadata-panel'
@@ -16,7 +15,7 @@ import type { MetadataShape } from '@/app/components/workflow/nodes/knowledge-re
 
 const MetadataTrigger = ({
   metadataFilteringConditions,
-  metadataList: originalMetadataList = [],
+  metadataList = [],
   handleRemoveCondition,
   selectedDatasetsLoaded,
   ...restProps
@@ -25,7 +24,6 @@ const MetadataTrigger = ({
   const [open, setOpen] = useState(false)
   const conditions = metadataFilteringConditions?.conditions || []
 
-  const metadataList = unionBy(originalMetadataList, 'name').sort(a => a.id === 'built-in' ? 1 : -1)
   useEffect(() => {
     if (selectedDatasetsLoaded) {
       conditions.forEach((condition) => {
diff --git a/web/app/components/workflow/nodes/knowledge-retrieval/panel.tsx b/web/app/components/workflow/nodes/knowledge-retrieval/panel.tsx
index 09d3cdc3f6..09159a67e3 100644
--- a/web/app/components/workflow/nodes/knowledge-retrieval/panel.tsx
+++ b/web/app/components/workflow/nodes/knowledge-retrieval/panel.tsx
@@ -4,6 +4,7 @@ import {
   useCallback,
   useMemo,
 } from 'react'
+import { intersectionBy } from 'lodash-es'
 import { useTranslation } from 'react-i18next'
 import VarReferencePicker from '../_base/components/variable/var-reference-picker'
 import useConfig from './use-config'
@@ -67,11 +68,11 @@ const Panel: FC<NodePanelProps<KnowledgeRetrievalNodeType>> = ({
   }, [setRerankModelOpen])
 
   const metadataList = useMemo(() => {
-    return selectedDatasets.filter((dataset) => {
+    return intersectionBy(...selectedDatasets.filter((dataset) => {
       return !!dataset.doc_metadata
     }).map((dataset) => {
       return dataset.doc_metadata!
-    }).flat()
+    }), 'name')
   }, [selectedDatasets])
 
   return (